Angie S. Hinrichs

Angie S. Hinrichs | JRNLClub

Research Statement

AI generated · 1d ago

Angie S. Hinrichs's indexed work centers on genome browsing and comparative genomics infrastructure, most prominently as first author of the UCSC Genome Browser Database update, a reference resource cited over 1,600 times. Her later first-author contributions extend this infrastructure toward variant annotation and data integration, and more recently toward real-time accessible phylogenetics for highly sampled viruses, including work on the ongoing evolution of UShER during the SARS-CoV-2 pandemic. Earlier middle-author contributions situate this work within large comparative genomics consortia, including the initial mouse genome sequencing and analysis and the ENCODE pilot project's functional element mapping. Her sustained collaboration with David H. Haussler and Ann S. Zweig reflects a long-running shared effort around genome browser tooling. No software, datasets, grants, or patents are indexed beyond her publications. Across these works, the throughline is building and refining accessible infrastructure for interpreting genomic and phylogenetic data at scale.

Most Cited Works

Initial sequencing and comparative analysis of the mouse genome

Mouse Genome Sequencing Consortium, Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R Brent, Daniel G Brown, Stephen D Brown, Carol Bult, John Burton, Jonathan Butler, Robert D Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte,

Research Areas

Genomics and Phylogenetic StudiesGenetics, Bioinformatics, and BiomedicalGenomics and Chromatin DynamicsSARS-CoV-2 and COVID-19 ResearchBioinformatics and Genomic Networks

Affiliations & Education

Education

1990–1995
Massachusetts Institute of Technology(US)
SB, SM · EECS

Employment

2002–present· now
University of California, Santa Cruz(US)
Bioinformatics Software Developer · Genomics Institute

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

ENCODE Project Consortium, Ewan Birney, John A Stamatoyannopoulos, Anindya Dutta, Roderic Guigó, Thomas R Gingeras, Elliott H Margulies, Zhiping Weng, Michael Snyder, Emmanouil T Dermitzakis, Robert E Thurman, Michael S Kuehn, Christopher M Taylor, Shane Neph, Christoph M Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A Greenbaum, Robert M Andrews, Paul Flicek, Patrick J Boyle, Hua Cao, Nigel P Carter, Gayle K Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C Dillon, Michael O Dorschner, Heike Fiegler, Paul G Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D James, Brett E Johnson, Ericka M Johnson, Tristan T Frum, Elizabeth R Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C Lefebvre, Patrick A Navas, Fidencio Neri, Stephen C J Parker, Peter J Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S Collins, Job Dekker, Jason D Lieb, Thomas D Tullius, Gregory E Crawford, Shamil Sunyaev, William S Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A Hirsch, Edward A Sekinger, Julien Lagarde, Josep F Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C Dickson, Daryl J Thomas, Matthew T Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K G Srinivasan, Wing-Kin Sung, Hong Sain Ooi, Kuo Ping Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L Tress, Alfonso Valencia, Siew Woh Choo, Chiou Yu Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G Clark, James B Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M Myers, Jane Rogers, Peter F Stadler, Todd M Lowe, Chia-Lin Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E Antonarakis, Yutao Fu, Eric D Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A Liefer, Kris A Wetterstrand, Peter J Good, Elise A Feingold, Mark S Guyer, Gregory M Cooper, George Asimenos, Colin N Dewey, Minmei Hou, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R Zhang, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W James Kent, Eric A Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D Trinklein, Zhengdong D Zhang, Leah Barrera, Rhona Stuart, David C King, Adam Ameur, Stefan Enroth, Mark C Bieda, Jonghwan Kim, Akshay A Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B Vega, Charlie W H Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J Oberley, David Inman, Michael A Singer, Todd A Richmond, Kyle J Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C Fowler, Phillippe Couttet, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Cordelia F Langford, David A Nix, Ghia Euskirchen, Stephen Hartman, Alexander E Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K Glass, M Geoff Rosenfeld, Shelley Force Aldred, Sara J Cooper, Anason Halees, Jane M Lin, Hennady P Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N S Haidar, Yong Yu, Yijun Ruan, Vishwanath R Iyer, Roland D Green, Claes Wadelius, Peggy J Farnham, Bing Ren, Rachel A Harte, Angie S Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M Kuhn, Donna Karolchik, Lluis Armengol, Christine P Bird, Paul I W de Bakker, Andrew D Kern, Nuria Lopez-Bigas, Joel D Martin, Barbara E Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B Hallgrímsdóttir, Julian Huppert, Michael C Zody, Gonçalo R Abecasis, Xavier Estivill, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V B Maduro, Baishali Maskeri, Jennifer C McDowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J de Jong

Nature2007

5,225Citations

Angie S. Hinrichs

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